| 1 | #!/usr/bin/env python2
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| 2 | """
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| 3 | gc_stats_to_tsv.py
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| 4 |
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| 5 | Turn a set of files with OILS_GC_STATS output into a TSV file.
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| 6 | """
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| 7 | from __future__ import print_function
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| 8 |
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| 9 | import collections
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| 10 | import os
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| 11 | import sys
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| 12 |
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| 13 |
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| 14 | def main(argv):
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| 15 | header = None
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| 16 |
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| 17 | for path in argv[1:]:
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| 18 | filename = os.path.basename(path)
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| 19 | join_id, _ = os.path.splitext(filename)
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| 20 |
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| 21 | d = collections.OrderedDict()
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| 22 |
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| 23 | d["join_id"] = join_id
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| 24 |
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| 25 | with open(path) as f:
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| 26 | for line in f:
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| 27 | line = line.strip()
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| 28 | if not line:
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| 29 | continue
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| 30 | key, value = line.split("=", 1)
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| 31 | key = key.strip().replace(" ", "_")
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| 32 | value = value.strip()
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| 33 | d[key] = value
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| 34 |
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| 35 | if header is None:
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| 36 | header = d.keys()
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| 37 | print("\t".join(header))
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| 38 | else:
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| 39 | # Ensure the order
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| 40 | assert d.keys() == header
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| 41 |
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| 42 | row = d.values()
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| 43 | print("\t".join(row))
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| 44 |
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| 45 |
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| 46 | if __name__ == '__main__':
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| 47 | try:
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| 48 | main(sys.argv)
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| 49 | except RuntimeError as e:
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| 50 | print('FATAL: %s' % e, file=sys.stderr)
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| 51 | sys.exit(1)
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