>>> py3-bioframe: Building community/py3-bioframe 0.8.0-r0 (using abuild 3.15.0-r0) started Sun, 12 Oct 2025 15:32:20 +0000 >>> py3-bioframe: Validating /home/udu/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist WARNING: opening /home/udu/packages//community: No such file or directory WARNING: opening /home/udu/packages//main: No such file or directory fetch http://dl-cdn.alpinelinux.org/alpine/v3.22/main/x86_64/APKINDEX.tar.gz fetch http://dl-cdn.alpinelinux.org/alpine/v3.22/community/x86_64/APKINDEX.tar.gz (1/97) Installing libquadmath (14.2.0-r6) (2/97) Installing libgfortran (14.2.0-r6) (3/97) Installing openblas (0.3.28-r0) (4/97) Installing py3-contourpy-pyc (1.3.1-r0) (5/97) Installing py3-cycler (0.12.1-r1) (6/97) Installing py3-cycler-pyc 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(3.6.1-r0) (97/97) Installing .makedepends-py3-bioframe (20251012.153221) Executing busybox-1.37.0-r19.trigger OK: 493 MiB in 186 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.8.0/bioframe-0.8.0.tar.gz >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.8.0/bioframe-0.8.0.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.8.0.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/bioframe-0.8.0.tar.gz... 2025-10-12 15:32:23,103 gpep517 INFO Building wheel via backend hatchling.build 2025-10-12 15:32:23,153 gpep517 INFO The backend produced .dist/bioframe-0.8.0-py3-none-any.whl bioframe-0.8.0-py3-none-any.whl ============================================================================================================================================ test session starts ============================================================================================================================================= platform linux -- Python 3.12.11, pytest-8.3.5, pluggy-1.5.0 rootdir: /home/udu/aports/community/py3-bioframe/src/bioframe-0.8.0 configfile: pyproject.toml testpaths: tests plugins: xdist-3.6.1 created: 20/20 workers 20 workers [70 items] ...ss....s............................................................ [100%] ========================================================================================================================================== short test summary info =========================================================================================================================================== SKIPPED [1] tests/test_extras.py:85: could not import 'Bio': No module named 'Bio' SKIPPED [1] tests/test_extras.py:129: could not import 'pysam': No module named 'pysam' SKIPPED [1] tests/test_extras.py:97: could not import 'pysam': No module named 'pysam' ======================================================================================================================================= 67 passed, 3 skipped in 6.54s ======================================================================================================================================== >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-doc*: Running split function doc... 'usr/share/doc' -> '/home/udu/aports/community/py3-bioframe/pkg/py3-bioframe-doc/usr/share/doc' >>> py3-bioframe-doc*: Preparing subpackage py3-bioframe-doc... >>> py3-bioframe-doc*: Running postcheck for py3-bioframe-doc >>> py3-bioframe-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/udu/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/udu/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/udu/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/udu/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-doc*: Tracing dependencies... >>> py3-bioframe-doc*: Package size: 7.7 KB >>> py3-bioframe-doc*: Compressing data... >>> py3-bioframe-doc*: Create checksum... >>> py3-bioframe-doc*: Create py3-bioframe-doc-0.8.0-r0.apk >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 263.5 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.8.0-r0.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 238.5 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.8.0-r0.apk >>> py3-bioframe: Build complete at Sun, 12 Oct 2025 15:32:30 +0000 elapsed time 0h 0m 10s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... (1/97) Purging .makedepends-py3-bioframe (20251012.153221) (2/97) Purging py3-matplotlib-pyc (3.9.3-r0) (3/97) Purging py3-matplotlib (3.9.3-r0) (4/97) Purging py3-contourpy-pyc (1.3.1-r0) (5/97) Purging py3-contourpy (1.3.1-r0) (6/97) Purging py3-cycler-pyc (0.12.1-r1) (7/97) Purging py3-cycler (0.12.1-r1) (8/97) Purging py3-fonttools-pyc (4.58.0-r0) (9/97) Purging py3-fonttools (4.58.0-r0) (10/97) Purging py3-kiwisolver-pyc (1.4.6-r0) (11/97) Purging py3-kiwisolver (1.4.6-r0) (12/97) Purging py3-matplotlib-data (3.9.3-r0) (13/97) Purging py3-matplotlib-fonts (3.9.3-r0) (14/97) Purging py3-pillow-pyc (11.2.1-r0) (15/97) Purging py3-pillow (11.2.1-r0) (16/97) Purging py3-pandas-pyc (2.2.3-r0) (17/97) Purging py3-pandas (2.2.3-r0) (18/97) Purging py3-dateutil-pyc (2.9.0-r1) (19/97) Purging py3-dateutil (2.9.0-r1) (20/97) Purging py3-six-pyc (1.17.0-r0) (21/97) Purging py3-six (1.17.0-r0) (22/97) Purging py3-numpy-tests (2.2.4-r1) (23/97) Purging py3-numpy-pyc (2.2.4-r1) (24/97) Purging py3-numpy (2.2.4-r1) (25/97) Purging openblas (0.3.28-r0) (26/97) Purging py3-tz-pyc (2025.2-r0) (27/97) Purging py3-tz (2025.2-r0) (28/97) Purging py3-tzdata-pyc (2025.2-r0) (29/97) Purging py3-tzdata (2025.2-r0) (30/97) Purging py3-attrs-pyc (25.3.0-r0) (31/97) Purging py3-attrs (25.3.0-r0) (32/97) Purging py3-yaml-pyc (6.0.2-r0) (33/97) Purging py3-yaml (6.0.2-r0) (34/97) Purging py3-requests-pyc (2.32.5-r0) (35/97) Purging py3-requests (2.32.5-r0) (36/97) Purging py3-certifi-pyc (2025.4.26-r0) (37/97) Purging py3-certifi (2025.4.26-r0) (38/97) Purging py3-charset-normalizer-pyc (3.4.2-r0) (39/97) Purging py3-charset-normalizer (3.4.2-r0) (40/97) Purging py3-idna-pyc (3.10-r0) (41/97) Purging py3-idna (3.10-r0) (42/97) Purging py3-urllib3-pyc (1.26.20-r0) (43/97) Purging py3-urllib3 (1.26.20-r0) (44/97) Purging py3-typing-extensions-pyc (4.13.2-r0) (45/97) Purging py3-typing-extensions (4.13.2-r0) (46/97) Purging py3-setuptools-pyc (80.9.0-r0) (47/97) Purging py3-setuptools (80.9.0-r0) (48/97) Purging py3-gpep517-pyc (19-r0) (49/97) Purging py3-gpep517 (19-r0) (50/97) Purging py3-installer-pyc (0.7.0-r2) (51/97) Purging py3-installer (0.7.0-r2) (52/97) Purging py3-hatchling-pyc (1.27.0-r0) (53/97) Purging py3-hatchling (1.27.0-r0) (54/97) Purging py3-editables-pyc (0.5-r2) (55/97) Purging py3-editables (0.5-r2) (56/97) Purging py3-pathspec-pyc (0.12.1-r2) (57/97) Purging py3-pathspec (0.12.1-r2) (58/97) Purging py3-trove-classifiers-pyc (2025.9.11.17-r0) (59/97) Purging py3-trove-classifiers (2025.9.11.17-r0) (60/97) Purging py3-wheel-pyc (0.46.1-r0) (61/97) Purging py3-wheel (0.46.1-r0) (62/97) Purging py3-pytest-xdist-pyc (3.6.1-r0) (63/97) Purging py3-pytest-xdist (3.6.1-r0) (64/97) Purging py3-execnet-pyc (2.1.1-r0) (65/97) Purging py3-execnet (2.1.1-r0) (66/97) Purging py3-pytest-pyc (8.3.5-r0) (67/97) Purging py3-pytest (8.3.5-r0) (68/97) Purging py3-iniconfig-pyc (2.1.0-r0) (69/97) Purging py3-iniconfig (2.1.0-r0) (70/97) Purging py3-packaging-pyc (25.0-r0) (71/97) Purging py3-packaging (25.0-r0) (72/97) Purging py3-parsing-pyc (3.2.3-r0) (73/97) Purging py3-parsing (3.2.3-r0) (74/97) Purging py3-pluggy-pyc (1.5.0-r0) (75/97) Purging py3-pluggy (1.5.0-r0) (76/97) Purging py3-py-pyc (1.11.0-r4) (77/97) Purging py3-py (1.11.0-r4) (78/97) Purging freetype (2.13.3-r0) (79/97) Purging lcms2 (2.16-r0) (80/97) Purging libgfortran (14.2.0-r6) (81/97) Purging libimagequant (4.2.2-r0) (82/97) Purging libpng (1.6.47-r0) (83/97) Purging libquadmath (14.2.0-r6) (84/97) Purging libwebpdemux (1.5.0-r0) (85/97) Purging libwebpmux (1.5.0-r0) (86/97) Purging libxcb (1.17.0-r0) (87/97) Purging libxdmcp (1.1.5-r1) (88/97) Purging openjpeg (2.5.3-r0) (89/97) Purging qhull (2020.2-r3) (90/97) Purging tiff (4.7.1-r0) (91/97) Purging yaml (0.2.5-r2) (92/97) Purging libbsd (0.12.2-r0) (93/97) Purging libjpeg-turbo (3.1.0-r0) (94/97) Purging libmd (1.1.0-r0) (95/97) Purging libwebp (1.5.0-r0) (96/97) Purging libsharpyuv (1.5.0-r0) (97/97) Purging libxau (1.0.12-r0) Executing busybox-1.37.0-r19.trigger OK: 296 MiB in 89 packages >>> py3-bioframe: Updating the community/x86_64 repository index... >>> py3-bioframe: Signing the index...